Capabilities

• Compression
• Archiving
• Encryption
• Using Genozip on an HPC
• Dual-coordinate VCF (DVCF)
• Filtering BAM or FASTQ reads by species using kraken2
• Downsampling and sharding
• Fixing contigs names (eg chr22 ⇆ 22)
• Converting SAM/BAM to FASTQ
• Converting a 23andMe 'Raw Genetic File' to VCF
• Converting MultiFASTA to Phylip and back
• Per-contig coverage
• Sex assignment
• idxstats
• FASTQ to BAM pipeline
• Handling GATK's "Unexpected base in allele bases" error

Questions? support@genozip.com