CapabilitiesΒΆ

  • Compression
  • Archiving
  • Dual-coordinate VCF (DVCF)
  • Filtering BAM or FASTQ reads by species using kraken2
  • Downsampling and sharding
  • Converting SAM/BAM to FASTQ
  • Converting a 23andMe 'Raw Genetic File' to VCF
  • Converting MultiFASTA to Phylip and back
  • Per-contig coverage
  • Sex assignment
  • idxstats

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  • Installing
  • Manual
  • Capabilities
    • Compression
    • Archiving
    • Dual-coordinate VCF (DVCF)
    • Filtering BAM or FASTQ reads by species using kraken2
    • Downsampling and sharding
    • Converting SAM/BAM to FASTQ
    • Converting a 23andMe 'Raw Genetic File' to VCF
    • Converting MultiFASTA to Phylip and back
    • Per-contig coverage
    • Sex assignment
    • idxstats
  • Applications
  • Algorithms
  • Source code
  • Publications & Citing
  • License
  • Contact

Related Topics

  • Documentation overview
    • Previous: Developer options
    • Next: Compression

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