Capabilities¶
- Compression
- Archiving
- Encryption
- Dual-coordinate VCF (DVCF)
- Filtering BAM or FASTQ reads by species using kraken2
- Downsampling and sharding
- Fixing contigs names (eg chr22 ⇆ 22)
- Converting SAM/BAM to FASTQ
- Converting a 23andMe 'Raw Genetic File' to VCF
- Converting MultiFASTA to Phylip and back
- Per-contig coverage
- Sex assignment
- idxstats
