Benchmarks

Below are some benchmarks measuring Genozip’s performance on a variety of file types. In the case of BAM, CRAM, FASTQ and VCF, Genozip is shown here compressing already-compressed files.

To see more, peer-reviewed, benchmarks, see Publications.

As can be appreciated from the detailed compression reports following the table, the compression gains strongly depend on the specific fields contained in a file, and can therefore vary significantly.

Details

Type

Size

.gz Size

.genozip

Genozip gain

Gain vs .gz

Data

Link to data

details

FASTQ (Illumina)

294.7 GB

61.2 GB

13.5 GB

21.8X

4.5X

30x Illumina NovaSeq (R1+R2)

Unpublished

details

FASTQ (Nanopore)

538 MB

268 MB

169.5 MB

3.2X

1.6X

Nanopore (virus) 1

NCBI

details

FASTQ (MGI)

265.5 GB

99.9 GB

48.8 MB

5.4X

2.0X

DNBSEQ-G400 (R1+R2)

CNGB Sequence Archive

details

BAM (Illumina)

41 GB

10 GB

4.1X

30x Illumina NovaSeq + Dragen

Unpublished

details

BAM (PacBio CLR)

53.8 GB

28 GB

1.9X

PacBio CLR (mapped)

1000 Genomes Project

details

BAM (PacBio CCS)

73.8 GB

38.7 GB

1.9X

PacBio CCS + Winnowmap (mapped)

Telomere-to-telomere consortium

details

BAM (Nanopore)

384.1 GB

209.3 GB

1.8X

Nanopore + Winnowmap (mapped)

Telomere-to-telomere consortium

details

BAM (Transcriptome)

1.9 GB

300.5 MB

6.6X

Transcriptome - Illumina + STAR

Encode project

details

CRAM (Illumina)

15 GB

9.8 GB

1.5X

Illumina NovaSeq + bwa mem

The European Bioinformatics Institute

details

VCF

175.3 GB

27 GB

7.8 GB

22.4X

3.3X

3202 human samples

1000 Genomes Project

details

VCF

1.2 TB

132.4 GB

31.6 GB

37.9X

4.2X

1135 plant samples

1001 Genomes - Arabidopsis Thaliana

details

VCF

26 GB

1.9 GB

315.5 MB

84.3X

6.2X

Rice

3K Rice Genome

details

VCF

165.4 GB

12.6 GB

763.5 MB

221.9X

16.9X

GVCF (single sample, human)

Unpublished

details

FASTA

1.2 GB

254.9 MB

1.5 MB

838.4X

170X

Covid-19 multi-FASTA 2

coronavirus.innar.com

details

GFF3

3.7 GB

91.8 MB

32.3 MB

117.9X

2.8X

Gene annotation

Telomere-to-telomere consortium

details

23andMe

23.6 MB

4.2 MB

5.7X

Consumer DNA test “raw data”

Unpublished

details

LOCS (Illumina)

32 MB

12MB

5.9 KB

5430X

2006X

Illumina s.locs file

BaseSpace Demo Data

details

LOCS (Illumina)

6.2 MB

4.4MB

3.3 MB

1.9X

1.3X

Illumina s_X_XXXX.locs file

BaseSpace Demo Data

Notes:

  • The tests were conducted with the --best option. For BAM, CRAM, Illumina FASTQ, GVCF files, the --reference option was used to specify the appropriate reference file, except for BAM5 for which --best=NO_REF was used. For Illumina FASTQ, the --pair option was used.

  • 1 the data was converted to fastq with fastq-dump and compressed to .gz with bgzip. genozip was used with the --multiseq option.

  • 2 the data was unzipped with unzip and then compressed to .gz with bgzip. genozip was used with the --multiseq option.

Detailed compression reports

The following reports can be produced during compression with genozip --stats or after compression with genocat --stats <myfile>.genozip.

FASTQ - 30x Illumina NovaSeq

FASTQ files (paired): <redacted>_R1_001.fastq.gz <redacted>_R2_001.fastq.gz
Reference: hs37d5.ref.genozip
Sequences: 860,000,926   Dictionaries: 36   Vblocks: 590 x 512 MB  Sections: 10823
Read name style: Illumina-fastq
Genozip version: 13.0.6 github
Date compressed: 2021-12-08 00:49:27 ACDT
Command line: genozip --best --pair -ft -e hs37d5.ref.genozip --stats <redacted>_R1_001.fastq.gz <redacted>_R2_001.fastq.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
QUAL                    7.7 GB  56.9%  118.7 GB  40.3%   15.4X
SEQ                     5.2 GB  38.1%  118.7 GB  40.3%   23.0X
DESC                  682.4 MB   4.9%   52.4 GB  17.8%   78.7X
Other                  71.1 KB   0.0%    4.8 GB   1.6% 70888.0X
LINE3                  23.6 KB   0.0%         -   0.0%    0.0X
GENOZIP vs BGZF        13.5 GB 100.0%   61.2 GB 100.0%    4.5X
GENOZIP vs TXT         13.5 GB 100.0%  294.7 GB 100.0%   21.8X

FASTQ - Nanopore virus data

FASTQ file: ERR2708427.1.fastq.gz
Sequences: 218,903   Dictionaries: 26   Vblocks: 2 x 512 MB  Sections: 37
Genozip version: 13.0.5 github
Date compressed: 2021-12-03 10:31:26 ACDT
Command line: genozip --stats --best --multiseq ERR2708427.1.fastq.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
QUAL                  123.2 MB  72.7%  254.1 MB  47.3%    2.1X
SEQ                    41.8 MB  24.6%  254.1 MB  47.3%    6.1X
DESC                    4.6 MB   2.7%   14.0 MB   2.6%    3.1X
Other                    470 B   0.0%    1.3 MB   0.2% 2794.5X
TXT_HEADER               348 B   0.0%         -   0.0%    0.0X
LINE3                     54 B   0.0%   14.0 MB   2.6% 271727.3X
GENOZIP vs BGZF       169.5 MB 100.0%  267.7 MB 100.0%    1.6X
GENOZIP vs TXT        169.5 MB 100.0%  537.5 MB 100.0%    3.2X

FASTQ - BGI data

FASTQ files (paired): V300016152A_L01_read_1.fq.gz V300016152A_L01_read_2.fq.gz
Reference: hs37d5.ref.genozip MD5=b0e641c998cc3eae6fa2f8726d98cddd genozip_version=12
Sequences: 850,258,934   Dictionaries: 38   Vblocks: 532 x 512 MB  Sections: 9013
Read name style: BGI-R9/
Genozip version: 13.0.8 github
Date compressed: 2022-01-05 22:53:48 ACDT
Command line: genozip -e hs37d5.ref.genozip -tw2 -f --best V300016152A_L01_read_1.fq.gz V300016152A_L01_read_2.fq.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
QUAL                   43.8 GB  89.8%  118.8 GB  44.7%    2.7X
SEQ                     4.9 GB  10.0%  118.8 GB  44.7%   24.3X
DESC                   77.1 MB   0.2%   23.2 GB   8.7%  307.9X
Other                  63.9 KB   0.0%    4.8 GB   1.8% 78018.5X
LINE3                  21.3 KB   0.0%         -   0.0%    0.0X
GENOZIP vs GZ          48.8 GB 100.0%   99.9 GB 100.0%    2.0X
GENOZIP vs TXT         48.8 GB 100.0%  265.5 GB 100.0%    5.4X

BAM - 30x Illumina NovaSeq + Dragen:

BAM file: <redacted>.bam
Reference: hs37d5.ref.genozip
Alignments: 636,660,181   Dictionaries: 161   Vblocks: 389 x 512 MB  Sections: 17340
Sorting: Sorted by POS
Read name style: Illumina
Genozip version: 13.0.2 github
Date compressed: 2021-11-09 17:14:19 Cen. Australia Daylight Time

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
QUAL                    5.7 GB  57.2%   87.9 GB  45.3%   15.3X
QNAME                   1.9 GB  19.3%   23.4 GB  12.1%   12.1X
SEQ                   890.2 MB   8.7%   46.5 GB  24.0%   53.5X
PNEXT                 441.8 MB   4.3%    2.4 GB   1.2%    5.5X
POS                   211.0 MB   2.1%    2.4 GB   1.2%   11.5X
CIGAR                 183.2 MB   1.8%    3.8 GB   1.9%   21.1X
FLAG                  151.9 MB   1.5%    1.2 GB   0.6%    8.0X
XS:i                  139.6 MB   1.4%  973.5 MB   0.5%    7.0X
AS:i                  124.6 MB   1.2%    2.4 GB   1.2%   19.5X
TLEN                  119.6 MB   1.2%    2.4 GB   1.2%   20.3X
XQ:i                   70.4 MB   0.7%  580.0 MB   0.3%    8.2X
Other                  41.7 MB   0.4%   10.1 GB   5.2%  248.6X
MAPQ                   20.3 MB   0.2%  607.2 MB   0.3%   29.9X
SA:Z                    7.8 MB   0.1%   31.2 MB   0.0%    4.0X
RNEXT                   6.6 MB   0.1%    2.4 GB   1.2%  367.5X
RNAME                  24.4 KB   0.0%    2.4 GB   1.2% 101926.8X
NM:i                   12.6 KB   0.0%    2.4 GB   1.2% 196672.2X
TXT_HEADER              5.6 KB   0.0%   16.8 KB   0.0%    3.0X
BAM_BIN                   43 B   0.0%    1.2 GB   0.6% 29612100.0X
RG:Z                      42 B   0.0%    1.2 GB   0.6% 30317150.0X
GENOZIP vs BGZF        10.0 GB 100.0%   41.0 GB 100.0%    4.1X
GENOZIP vs TXT         10.0 GB 100.0%  194.0 GB 100.0%   19.4X

BAM - PacBio CLR (mapped)

BAM file: NA12878.pacbio.bwa-sw.20140202.bam
Reference: hs37d5.ref.genozip
Alignments: 25,968,256   Dictionaries: 163   Vblocks: 215 x 512 MB  Sections: 9825
Sorting: Sorted by POS
Read name style: PacBio-Range
Genozip version: 13.0.5 github
Date compressed: 2021-11-30 21:05:14 ACDT
Command line: genozip --reference hs37d5.ref.genozip --best --stats NA12878.pacbio.bwa-sw.20140202.bam

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
QUAL                   19.3 GB  69.2%   41.1 GB  38.3%    2.1X
SEQ                     3.7 GB  13.3%   20.6 GB  19.2%    5.6X
CIGAR                   2.4 GB   8.6%   22.6 GB  21.1%    9.4X
SA:Z                    2.3 GB   8.2%   19.1 GB  17.8%    8.4X
QNAME                 103.6 MB   0.4%    1.9 GB   1.8%   18.7X
AS:i                   32.0 MB   0.1%   38.0 MB   0.0%    1.2X
XS:i                   31.1 MB   0.1%   29.2 MB   0.0%    0.9X
POS                    24.5 MB   0.1%   99.1 MB   0.1%    4.0X
Other                  11.6 MB   0.0%  520.0 MB   0.5%   44.9X
MAPQ                   10.6 MB   0.0%   24.8 MB   0.0%    2.3X
FLAG                    7.1 MB   0.0%   49.5 MB   0.0%    6.9X
PNEXT                  51.7 KB   0.0%   99.1 MB   0.1% 1962.5X
NM:i                   49.2 KB   0.0%   29.9 MB   0.0%  622.7X
RNAME                  10.8 KB   0.0%   99.1 MB   0.1% 9369.7X
RNEXT                   9.5 KB   0.0%   99.1 MB   0.1% 10686.5X
TXT_HEADER              4.0 KB   0.0%   19.7 KB   0.0%    5.0X
TLEN                      83 B   0.0%   99.1 MB   0.1% 1251482.2X
RG:Z                      56 B   0.0%  396.2 MB   0.4% 7419501.5X
PG:Z                      55 B   0.0%  371.5 MB   0.3% 7082251.5X
BAM_BIN                   43 B   0.0%   49.5 MB   0.0% 1207825.9X
GENOZIP vs BGZF        28.0 GB 100.0%   53.8 GB 100.0%    1.9X
GENOZIP vs TXT         28.0 GB 100.0%  107.3 GB 100.0%    3.8X

BAM - PacBio CCS (mapped)

BAM file: chm13.draft_v1.1.hifi_20k.wm_2.01.pri.bam
Reference: chm13.draft_v1.1.ref.genozip
Alignments: 5,575,318   Dictionaries: 164   Vblocks: 286 x 512 MB  Sections: 11865
Sorting: Sorted by POS
Read name style: PacBio-Label
Genozip version: 13.0.5 conda
Date compressed: 2021-12-08 13:35:00 ACDT
Command line: genozip -ftw -e chm13.draft_v1.1.ref.genozip --best chm13.draft_v1.1.hifi_20k.wm_2.01.pri.bam

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
QUAL                   38.3 GB  98.9%   93.5 GB  65.5%    2.4X
CIGAR                 273.3 MB   0.7%    1.4 GB   1.0%    5.4X
SEQ                    75.4 MB   0.2%   46.8 GB  32.7%  635.7X
QNAME                  16.7 MB   0.0%  188.1 MB   0.1%   11.2X
AS:i                    9.4 MB   0.0%   10.6 MB   0.0%    1.1X
ms:i                    9.0 MB   0.0%   10.6 MB   0.0%    1.2X
s1:i                    8.2 MB   0.0%   10.6 MB   0.0%    1.3X
POS                     7.4 MB   0.0%   21.3 MB   0.0%    2.9X
Other                   5.9 MB   0.0%  196.8 MB   0.1%   33.1X
cm:i                    5.9 MB   0.0%   10.6 MB   0.0%    1.8X
rl:i                    5.4 MB   0.0%    6.9 MB   0.0%    1.3X
de:f                    4.0 MB   0.0%   21.3 MB   0.0%    5.3X
s2:i                  842.4 KB   0.0%    5.7 MB   0.0%    6.9X
FLAG                  721.6 KB   0.0%   10.6 MB   0.0%   15.1X
SA:Z                  330.1 KB   0.0%  596.4 KB   0.0%    1.8X
MD:Z                   35.2 KB   0.0%  533.8 MB   0.4% 15524.7X
MAPQ                   33.7 KB   0.0%    5.3 MB   0.0%  161.6X
PNEXT                  32.5 KB   0.0%   21.3 MB   0.0%  670.5X
nn:i                   13.2 KB   0.0%    5.3 MB   0.0%  412.3X
RNEXT                  12.4 KB   0.0%   21.3 MB   0.0% 1753.8X
RNAME                  12.1 KB   0.0%   21.3 MB   0.0% 1801.1X
TXT_HEADER              2.3 KB   0.0%   24.6 KB   0.0%   10.8X
zd:i                    1.2 KB   0.0%      69 B   0.0%    0.1X
tp:A                     233 B   0.0%    5.3 MB   0.0% 23928.4X
NM:i                      85 B   0.0%    5.3 MB   0.0% 65785.6X
TLEN                      83 B   0.0%   21.3 MB   0.0% 268690.0X
BAM_BIN                   43 B   0.0%   10.6 MB   0.0% 259317.1X
GENOZIP vs BGZF        38.7 GB 100.0%   73.8 GB 100.0%    1.9X
GENOZIP vs TXT         38.7 GB 100.0%  142.8 GB 100.0%    3.7X

BAM - Nanopore (mapped)

BAM file: chm13.draft_v1.1.ont_guppy_3.6.0.wm_2.01.pri.bam
Reference: chm13.draft_v1.1.ref.genozip
Alignments: 13,364,876   Dictionaries: 168   Vblocks: 1321 x 512 MB  Sections: 65852
Sorting: Sorted by POS
Read name style: Nanopore
Genozip version: 13.0.6 github
Date compressed: 2021-12-08 02:36:21 ACDT
Command line: genozip --best -wtf -e chm13.draft_v1.1.ref.genozip chm13.draft_v1.1.ont_guppy_3.6.0.wm_2.01.pri.bam

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
QUAL                  186.1 GB  88.9%  351.6 GB  53.3%    1.9X
CIGAR                  11.8 GB   5.6%   84.2 GB  12.8%    7.2X
SEQ                    11.0 GB   5.3%  175.9 GB  26.6%   15.9X
QNAME                 214.8 MB   0.1%  484.3 MB   0.1%    2.3X
MD:Z                   39.6 MB   0.0%   46.7 GB   7.1% 1208.4X
AS:i                   27.8 MB   0.0%   30.6 MB   0.0%    1.1X
SA:Z                   26.9 MB   0.0%  154.8 MB   0.0%    5.8X
ms:i                   25.0 MB   0.0%   30.6 MB   0.0%    1.2X
s1:i                   21.9 MB   0.0%   23.1 MB   0.0%    1.1X
Other                  20.9 MB   0.0%  475.1 MB   0.1%   22.8X
de:f                   17.4 MB   0.0%   51.0 MB   0.0%    2.9X
cm:i                   16.3 MB   0.0%   18.6 MB   0.0%    1.1X
POS                    15.3 MB   0.0%   51.0 MB   0.0%    3.3X
CG:B:I                 14.3 MB   0.0%  118.9 MB   0.0%    8.3X
rl:i                    6.7 MB   0.0%   13.6 MB   0.0%    2.0X
s2:i                    3.7 MB   0.0%   13.4 MB   0.0%    3.6X
FLAG                    2.1 MB   0.0%   25.5 MB   0.0%   12.3X
MAPQ                    1.6 MB   0.0%   12.7 MB   0.0%    8.0X
PNEXT                 167.9 KB   0.0%   51.0 MB   0.0%  311.0X
zd:i                  126.6 KB   0.0%  109.7 KB   0.0%    0.9X
nn:i                   59.4 KB   0.0%   12.7 MB   0.0%  219.6X
RNEXT                  56.9 KB   0.0%   51.0 MB   0.0%  917.7X
RNAME                  52.6 KB   0.0%   51.0 MB   0.0%  993.3X
NM:i                   39.2 KB   0.0%   21.8 MB   0.0%  569.9X
tp:A                   28.1 KB   0.0%   12.7 MB   0.0%  464.4X
TXT_HEADER              1.8 KB   0.0%   12.0 KB   0.0%    6.8X
TLEN                      83 B   0.0%   51.0 MB   0.0% 644090.4X
BAM_BIN                   43 B   0.0%   25.5 MB   0.0% 621622.1X
GENOZIP vs BGZF       209.3 GB 100.0%  384.1 GB 100.0%    1.8X
GENOZIP vs TXT        209.3 GB 100.0%  660.1 GB 100.0%    3.2X

BAM - Transcriptome - Illumina + STAR

BAM file: ENCFF047UEJ.bam
Alignments: 75,910,558   Contexts: 31   Vblocks: 34 x 512 MB  Sections: 162460
Sorting: Collated by QNAME
Aligner: STAR
Read name style: Illumina
Genozip version: 14.0.0 github
Date compressed: 2022-06-22 20:27:41 ACDT
Command line: genozip -ftw --best=NO_REF ENCFF047UEJ.bam

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
POS                    73.8 MB  24.5%  289.6 MB   1.7%    3.9X
SEQ                    61.6 MB  20.5%    3.9 GB  23.0%   64.6X
RNAME                  57.5 MB  19.1%  289.6 MB   1.7%    5.0X
QUAL                   54.3 MB  18.1%    7.1 GB  42.2%  134.6X
QNAME                  25.5 MB   8.5%    2.8 GB  16.7%  112.9X
FLAG                    8.8 MB   2.9%  144.8 MB   0.8%   16.4X
NH:i                    8.1 MB   2.7%   72.4 MB   0.4%    8.9X
MAPQ                    6.9 MB   2.3%   72.4 MB   0.4%   10.5X
TXT_HEADER              1.7 MB   0.6%   11.6 MB   0.1%    6.8X
Other                 748.8 KB   0.2%  730.4 MB   4.2%  998.8X
CIGAR                 739.5 KB   0.2%  431.5 MB   2.5%  597.5X
AS:i                  516.6 KB   0.2%  732.5 KB   0.0%    1.4X
nM:i                  194.7 KB   0.1%  732.5 KB   0.0%    3.8X
uT:A                   59.9 KB   0.0%  732.5 KB   0.0%   12.2X
HI:i                    3.2 KB   0.0%   72.4 MB   0.4% 22954.5X
RNEXT                   1.5 KB   0.0%  289.6 MB   1.7% 199502.1X
PNEXT                     83 B   0.0%  289.6 MB   1.7% 3658340.2X
TLEN                      83 B   0.0%  289.6 MB   1.7% 3658340.2X
BAM_BIN                   43 B   0.0%  144.8 MB   0.8% 3530723.8X
GENOZIP vs BAM        300.5 MB 100.0%    1.9 GB 100.0%    6.6X
GENOZIP vs TXT        300.5 MB 100.0%   16.9 GB 100.0%   57.6X

CRAM - Illumina NovaSeq + bwa mem

SAM file: NA12878.final.cram
Reference: GRCh38_full_analysis_set_plus_decoy_hla.ref.genozip
Alignments: 768,580,569   Dictionaries: 160   Vblocks: 749 x 512 MB  Sections: 44749
Sorting: Sorted by POS
Read name style: Illumina
Genozip version: 13.0.2 conda
Date compressed: 2021-11-09 17:32:34 ACDT

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
QUAL                    2.7 GB  27.7%  108.1 GB  28.9%   39.9X
QNAME                   2.4 GB  24.7%   27.5 GB   7.4%   11.4X
XA:Z                    1.4 GB  14.8%   13.7 GB   3.7%    9.5X
SEQ                   925.9 MB   9.3%  108.1 GB  28.9%  119.5X
PNEXT                 630.8 MB   6.3%    6.6 GB   1.8%   10.7X
XS:i                  305.0 MB   3.1%    2.1 GB   0.6%    7.2X
POS                   275.7 MB   2.8%    6.6 GB   1.8%   24.4X
RG:Z                  275.0 MB   2.8%   29.3 GB   7.8%  109.3X
FLAG                  213.7 MB   2.1%    2.6 GB   0.7%   12.6X
AS:i                  129.6 MB   1.3%    2.8 GB   0.8%   22.4X
SA:Z                  115.3 MB   1.2%  838.7 MB   0.2%    7.3X
MAPQ                  112.9 MB   1.1%    2.1 GB   0.6%   19.1X
MC:Z                  106.3 MB   1.1%    3.8 GB   1.0%   36.5X
CIGAR                  91.8 MB   0.9%    3.8 GB   1.0%   42.2X
MQ:i                   37.0 MB   0.4%    2.1 GB   0.6%   57.5X
RNEXT                  20.6 MB   0.2%    1.5 GB   0.4%   76.5X
Other                  17.6 MB   0.2%   29.0 GB   7.8% 1692.4X
TLEN                   14.0 MB   0.1%    3.2 GB   0.9%  233.7X
pa:f                    6.9 MB   0.1%   38.5 MB   0.0%    5.6X
MD:Z                    1.2 MB   0.0%    4.0 GB   1.1% 3464.2X
RNAME                 374.0 KB   0.0%    4.1 GB   1.1% 11515.0X
TXT_HEADER             72.5 KB   0.0%  626.9 KB   0.0%    8.6X
NM:i                   66.8 KB   0.0%    1.4 GB   0.4% 22624.0X
Reference                112 B   0.0%         -   0.0%    0.0X
PG:Z                      55 B   0.0%   10.7 GB   2.9% 209612880.0X
BAM_BIN                   43 B   0.0%         -   0.0%    0.0X
TOTAL                   9.8 GB 100.0%  374.2 GB 100.0%   38.3X

VCF - 3202 samples from the 1000 Genomes Project

VCF file: 20201028_CCDG_14151_B01_GRM_WGS_2020-08-05_chr22.recalibrated_variants.vcf.gz
Samples: 3202   Variants: 1,927,372   Dictionaries: 401   Vblocks: 351 x 512 MB  Sections: 158051
Genozip version: 13.0.3 github
Date compressed: 2021-11-14 08:56:28 ACDT

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
FORMAT/PL               5.0 GB  64.3%   59.4 GB  33.9%   11.8X
FORMAT/AD               2.4 GB  30.9%   24.7 GB  14.1%   10.2X
FORMAT/GT              67.2 MB   0.8%   17.2 GB   9.8%  262.8X
FORMAT/GQ              65.3 MB   0.8%   11.2 GB   6.4%  176.0X
FORMAT/PID             63.5 MB   0.8%    3.2 GB   1.8%   51.6X
FORMAT/PGT             38.4 MB   0.5%    2.3 GB   1.3%   60.1X
FORMAT/DP              19.6 MB   0.2%   11.4 GB   6.5%  593.2X
FORMAT/AB              14.9 MB   0.2%    5.7 GB   3.2%  388.8X
INFO/AC_Het_EUR_unre    5.9 MB   0.1%   26.9 MB   0.0%    4.6X
QUAL                    5.1 MB   0.1%   13.7 MB   0.0%    2.7X
INFO/DP                 4.4 MB   0.1%   10.5 MB   0.0%    2.4X
INFO/AF_AMR_unrel       3.4 MB   0.0%   20.4 MB   0.0%    6.0X
INFO/VQSLOD             3.3 MB   0.0%    9.6 MB   0.0%    2.9X
INFO/FS                 3.0 MB   0.0%    7.3 MB   0.0%    2.5X
INFO/AF                 2.9 MB   0.0%   21.9 MB   0.0%    7.6X
INFO/MQRankSum          2.8 MB   0.0%    9.3 MB   0.0%    3.3X
INFO/SOR                2.8 MB   0.0%    9.0 MB   0.0%    3.2X
INFO/BaseQRankSum       2.8 MB   0.0%    9.2 MB   0.0%    3.4X
INFO/QD                 2.7 MB   0.0%    8.5 MB   0.0%    3.1X
INFO/ReadPosRankSum     2.7 MB   0.0%    9.0 MB   0.0%    3.3X
INFO/AF_EUR_unrel       2.7 MB   0.0%   16.9 MB   0.0%    6.2X
INFO/ClippingRankSum    2.7 MB   0.0%    9.3 MB   0.0%    3.4X
INFO/AC_AMR_unrel       2.3 MB   0.0%    5.8 MB   0.0%    2.5X
INFO/MLEAF              2.3 MB   0.0%   17.3 MB   0.0%    7.7X
INFO/AF_AFR             2.2 MB   0.0%   11.9 MB   0.0%    5.4X
INFO/ExcHet             2.2 MB   0.0%   10.8 MB   0.0%    4.9X
INFO/AC_Het_AFR         2.1 MB   0.0%    5.7 MB   0.0%    2.8X
INFO/InbreedingCoeff    2.0 MB   0.0%   10.8 MB   0.0%    5.5X
INFO/ExcHet_AFR         1.9 MB   0.0%    7.8 MB   0.0%    4.0X
REF+ALT                 1.9 MB   0.0%   12.4 MB   0.0%    6.4X
INFO/MLEAC              1.9 MB   0.0%    3.5 MB   0.0%    1.8X
INFO/HWE                1.9 MB   0.0%    6.2 MB   0.0%    3.2X
INFO/AC_EUR_unrel       1.9 MB   0.0%    5.6 MB   0.0%    2.9X
INFO/AC_Het             1.9 MB   0.0%    3.4 MB   0.0%    1.8X
INFO/AF_SAS             1.6 MB   0.0%    9.2 MB   0.0%    5.6X
INFO/AF_AMR             1.6 MB   0.0%    8.9 MB   0.0%    5.5X
INFO/AC_AFR             1.6 MB   0.0%    3.1 MB   0.0%    1.9X
INFO/AF_EUR             1.6 MB   0.0%    8.6 MB   0.0%    5.4X
INFO/AF_SAS_unrel       1.6 MB   0.0%    8.8 MB   0.0%    5.6X
INFO/AC_Het_SAS         1.5 MB   0.0%    5.4 MB   0.0%    3.5X
INFO/AF_EAS             1.5 MB   0.0%    8.5 MB   0.0%    5.6X
INFO/AC_Het_AMR         1.5 MB   0.0%    5.3 MB   0.0%    3.5X
POS                     1.5 MB   0.0%   16.5 MB   0.0%   11.2X
INFO/AC_Het_EUR         1.5 MB   0.0%    5.4 MB   0.0%    3.7X
INFO/HWE_AFR            1.4 MB   0.0%    5.0 MB   0.0%    3.5X
INFO/AC_Het_EAS         1.4 MB   0.0%    5.3 MB   0.0%    3.8X
INFO/ExcHet_AMR         1.4 MB   0.0%    6.2 MB   0.0%    4.4X
INFO/ExcHet_SAS         1.4 MB   0.0%    5.9 MB   0.0%    4.3X
INFO/MQ                 1.4 MB   0.0%    5.8 MB   0.0%    4.3X
INFO/ExcHet_EUR         1.3 MB   0.0%    5.7 MB   0.0%    4.2X
INFO/ExcHet_EAS         1.3 MB   0.0%    5.4 MB   0.0%    4.3X
INFO/AC_SAS             1.2 MB   0.0%    2.8 MB   0.0%    2.3X
INFO/AC_AMR             1.2 MB   0.0%    2.8 MB   0.0%    2.3X
INFO/AC_EUR             1.2 MB   0.0%    2.8 MB   0.0%    2.4X
INFO/AC_SAS_unrel       1.2 MB   0.0%    2.8 MB   0.0%    2.4X
INFO/AC_EAS             1.1 MB   0.0%    2.8 MB   0.0%    2.5X
INFO/HWE_SAS            1.1 MB   0.0%    4.2 MB   0.0%    4.0X
INFO/HWE_AMR            1.0 MB   0.0%    4.1 MB   0.0%    4.0X
INFO/HWE_EUR            1.0 MB   0.0%    4.1 MB   0.0%    4.0X
INFO/HWE_EAS          981.2 KB   0.0%    4.0 MB   0.0%    4.1X
INFO/AC_Hom           936.7 KB   0.0%    2.8 MB   0.0%    3.1X
INFO/ME               926.4 KB   0.0%    4.5 MB   0.0%    4.9X
INFO/AC               778.4 KB   0.0%    3.5 MB   0.0%    4.6X
INFO/AN_AMR_unrel     537.4 KB   0.0%   12.8 MB   0.0%   24.5X
INFO                  479.4 KB   0.0%    1.6 GB   0.9% 3600.3X
INFO/AN_EUR_unrel     472.6 KB   0.0%   14.4 MB   0.0%   31.2X
INFO/AN               457.6 KB   0.0%    7.4 MB   0.0%   16.4X
Other                 391.4 KB   0.0%   38.1 GB  21.7% 102014.1X
FORMAT                347.0 KB   0.0%   37.9 MB   0.0%  111.8X
INFO/culprit          340.1 KB   0.0%    5.5 MB   0.0%   16.7X
INFO/AN_AFR           337.9 KB   0.0%    7.3 MB   0.0%   22.2X
INFO/AN_EUR           285.7 KB   0.0%    7.3 MB   0.0%   26.2X
INFO/AN_SAS           283.2 KB   0.0%    7.3 MB   0.0%   26.4X
INFO/AN_EAS           273.6 KB   0.0%    7.3 MB   0.0%   27.3X
INFO/AN_AMR           272.8 KB   0.0%    5.5 MB   0.0%   20.7X
INFO/AN_SAS_unrel     266.6 KB   0.0%    5.5 MB   0.0%   21.2X
FILTER                147.0 KB   0.0%   15.0 MB   0.0%  104.6X
INFO/NEGATIVE_TRAIN_   14.1 KB   0.0%         -   0.0%    0.0X
TXT_HEADER             13.2 KB   0.0%  201.7 KB   0.0%   15.2X
INFO/POSITIVE_TRAIN_   12.2 KB   0.0%         -   0.0%    0.0X
COORDS                   536 B   0.0%         -   0.0%    0.0X
CHROM                    139 B   0.0%   11.0 MB   0.0% 83195.9X
ID                        42 B   0.0%    3.7 MB   0.0% 91779.6X
INFO/MQ0                  42 B   0.0%    1.8 MB   0.0% 45889.8X
GENOZIP vs BGZF         7.8 GB 100.0%   26.0 GB 100.0%    3.3X
GENOZIP vs TXT          7.8 GB 100.0%  175.3 GB 100.0%   22.4X

VCF - 1135 Arabidopsis Thaliana samples

VCF file: 1001genomes_snp-short-indel_with_tair10_only_ACGTN.vcf.gz
Samples: 1135   Variants: 119,146,348   Dictionaries: 190   Vblocks: 2398 x 512 MB  Sections: 56957
Genozip version: 13.0.5 github
Date compressed: 2021-11-22 11:28:13 ACDT
Command line: genozip --stats --best 1001genomes_snp-short-indel_with_tair10_only_ACGTN.vcf.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
FORMAT/DP              22.6 GB  71.6%  206.5 GB  17.2%    9.1X
FORMAT/GQ               8.7 GB  27.5%  231.7 GB  19.3%   26.6X
FORMAT/GT             237.1 MB   0.7%  377.8 GB  31.5% 1631.6X
REF+ALT                41.4 MB   0.1%  460.5 MB   0.0%   11.1X
QUAL                  928.5 KB   0.0%  340.9 MB   0.0%  376.0X
Other                 296.1 KB   0.0%  377.8 GB  31.5% 1337972.4X
POS                   236.6 KB   0.0%  969.7 MB   0.1% 4197.5X
CHROM                  74.6 KB   0.0%  227.3 MB   0.0% 3119.3X
TXT_HEADER              1.5 KB   0.0%    6.0 KB   0.0%    3.9X
COORDS                   547 B   0.0%         -   0.0%    0.0X
INFO                      76 B   0.0%  454.5 MB   0.0% 6270860.5X
FORMAT                    51 B   0.0% 1022.6 MB   0.1% 21025826.0X
INFO/DP                   49 B   0.0%  545.3 MB   0.0% 11669053.0X
FILTER                    45 B   0.0%  568.1 MB   0.0% 13238482.0X
ID                        42 B   0.0%  227.3 MB   0.0% 5673636.0X
GENOZIP vs BGZF        31.6 GB 100.0%  132.4 GB 100.0%    4.2X
GENOZIP vs TXT         31.6 GB 100.0%    1.2 TB 100.0%   37.9X

VCF - 3K Rice Genome

VCF file: IRIS_313-10000.snp.vcf.gz
Samples: 1   Variants: 409,606,670   Dictionaries: 302   Vblocks: 52 x 512 MB  Sections: 3288
Genozip version: 13.0.4 github
Date compressed: 2021-11-20 20:51:00 ACDT

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
REF+ALT                93.3 MB  29.6%    1.5 GB   5.9%   16.7X
QUAL                   70.0 MB  22.2%    2.0 GB   7.8%   29.7X
INFO/MQ                68.2 MB  21.6%    1.7 GB   6.4%   25.0X
INFO/DP                52.3 MB  16.6%  593.1 MB   2.2%   11.3X
INFO/MQ0                6.6 MB   2.1%  360.3 MB   1.4%   54.5X
INFO                    3.4 MB   1.1%    5.8 GB  22.4% 1757.9X
FORMAT/DP               2.7 MB   0.8%  561.5 MB   2.1%  211.5X
FORMAT/PL               2.6 MB   0.8%   11.2 MB   0.0%    4.3X
FORMAT/GT               2.6 MB   0.8%    1.1 GB   4.4%  454.9X
Other                   2.6 MB   0.8%  716.6 MB   2.7%  280.6X
FORMAT                  2.5 MB   0.8%    2.1 GB   8.1%  848.9X
INFO/QD                 2.1 MB   0.7%    6.8 MB   0.0%    3.3X
FORMAT/AD               1.1 MB   0.3%    5.2 MB   0.0%    4.7X
FILTER                902.5 KB   0.3%  785.2 MB   3.0%  890.9X
FORMAT/GQ             811.5 KB   0.3%    2.7 MB   0.0%    3.4X
POS                   715.0 KB   0.2%    3.2 GB  12.2% 4627.1X
INFO/MQRankSum        647.9 KB   0.2%    2.3 MB   0.0%    3.6X
INFO/ReadPosRankSum   643.2 KB   0.2%    2.2 MB   0.0%    3.5X
INFO/BaseQRankSum     638.8 KB   0.2%    2.2 MB   0.0%    3.5X
INFO/HaplotypeScore   443.5 KB   0.1%    7.7 MB   0.0%   17.8X
INFO/FS               373.2 KB   0.1%    7.2 MB   0.0%   19.7X
CHROM                 137.7 KB   0.0%    4.4 GB  17.1% 33717.5X
INFO/MLEAF             82.6 KB   0.0%    6.1 MB   0.0%   75.2X
INFO/MLEAC             82.6 KB   0.0%    1.4 MB   0.0%   17.7X
INFO/AF                82.1 KB   0.0%    6.1 MB   0.0%   75.6X
INFO/RPA               77.6 KB   0.0%  317.9 KB   0.0%    4.1X
INFO/RU                64.3 KB   0.0%  138.0 KB   0.0%    2.1X
TXT_HEADER             46.7 KB   0.0%  546.0 KB   0.0%   11.7X
INFO/Dels              35.0 KB   0.0%    5.1 MB   0.0%  149.8X
INFO/AC                 4.7 KB   0.0%    1.4 MB   0.0%  313.4X
INFO/STR                2.1 KB   0.0%         -   0.0%    0.0X
COORDS                   547 B   0.0%         -   0.0%    0.0X
INFO/AN                   83 B   0.0%  321.7 MB   1.2% 4064608.5X
ID                        42 B   0.0%  781.3 MB   2.9% 19505078.0X
GENOZIP vs BGZF       315.5 MB 100.0%    1.9 GB 100.0%    6.2X
GENOZIP vs TXT        315.5 MB 100.0%   26.0 GB 100.0%   84.3X

VCF - GVCF, single sample, human

VCF file: <redacted>.vcf.gz
Reference: GRCh38_full_analysis_set_plus_decoy_hla.ref.genozip MD5=1689464290 genozip_version=8
Samples: 1   Variants: 3,217,346,917   Contexts: 143   Vblocks: 331 x 512 MB  Sections: 42897
Genozip version: 14.0.0 github
Date compressed: 2022-06-06 15:11:25 ACDT
Command line: genozip -fwe GRCh38_full_analysis_set_plus_decoy_hla.ref.genozip -t --best <redacted>.vcf.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
FORMAT/RGQ            329.6 MB  44.8%    5.6 GB   3.4%   17.5X
INFO/DP               264.1 MB  35.9%    5.3 GB   3.2%   20.6X
FORMAT/GT              14.1 MB   1.9%    9.0 GB   5.4%  652.3X
FORMAT/PL              12.1 MB   1.6%   42.9 MB   0.0%    3.5X
Other                  11.7 MB   1.6%    9.0 GB   5.4%  785.8X
FORMAT                 11.7 MB   1.6%   30.0 GB  18.1% 2629.3X
FORMAT/DP              10.8 MB   1.5%    5.6 GB   3.4%  532.0X
INFO                   10.8 MB   1.5%   22.5 GB  13.6% 2133.7X
REF+ALT                10.1 MB   1.4%   12.0 GB   7.2% 1215.1X
FORMAT/AD               7.6 MB   1.0%   28.7 MB   0.0%    3.8X
QUAL                    7.2 MB   1.0%    6.0 GB   3.6%  853.2X
INFO/QD                 7.0 MB   0.9%   23.0 MB   0.0%    3.3X
INFO/SOR                5.6 MB   0.8%   23.4 MB   0.0%    4.2X
INFO/MQRankSum          5.5 MB   0.7%   27.4 MB   0.0%    5.0X
INFO/BaseQRankSum       5.4 MB   0.7%   26.4 MB   0.0%    4.9X
INFO/ClippingRankSum    5.3 MB   0.7%   26.6 MB   0.0%    5.0X
INFO/ReadPosRankSum     5.3 MB   0.7%   24.9 MB   0.0%    4.7X
INFO/FS                 3.3 MB   0.5%   23.6 MB   0.0%    7.1X
INFO/MQ                 2.6 MB   0.3%   29.7 MB   0.0%   11.6X
FORMAT/AB               1.6 MB   0.2%   10.4 MB   0.0%    6.5X
FORMAT/GQ               1.6 MB   0.2%    9.3 MB   0.0%    5.9X
INFO/AF                 1.0 MB   0.1%   26.8 MB   0.0%   26.1X
INFO/ExcessHet        547.4 KB   0.1%   33.1 MB   0.0%   61.9X
INFO/MLEAC            445.6 KB   0.1%    4.8 MB   0.0%   11.0X
CHROM                 279.5 KB   0.0%   18.0 GB  10.9% 67471.8X
FORMAT/PGT            245.3 KB   0.0%    5.2 MB   0.0%   21.5X
FORMAT/PID            207.7 KB   0.0%   29.7 MB   0.0%  146.6X
INFO/AC               140.0 KB   0.0%    6.1 MB   0.0%   44.9X
POS                   103.0 KB   0.0%   27.4 GB  16.5% 278350.3X
INFO/MLEAF             98.9 KB   0.0%   21.5 MB   0.0%  222.9X
TXT_HEADER             13.4 KB   0.0%  178.8 KB   0.0%   13.3X
SEQ                     3.1 KB   0.0%         -   0.0%    0.0X
INFO/AN                   83 B   0.0%    2.7 GB   1.6% 34403056.0X
ID                        42 B   0.0%    6.0 GB   3.6% 153206992.0X
FILTER                    42 B   0.0%    6.0 GB   3.6% 153206992.0X
INFO/MQ0                  42 B   0.0%    5.9 MB   0.0% 148305.9X
GENOZIP vs GZ         736.2 MB 100.0%   12.6 GB 100.0%   17.6X
GENOZIP vs TXT        736.2 MB 100.0%  165.4 GB 100.0%  230.1X

FASTA - Covid-19 multi-FASTA

FASTA file: coronavirus.unwrapped.fasta.gz
Lines: 89,836   Dictionaries: 11   Vblocks: 3 x 512 MB  Sections: 32
Sequence type: Nucleotide bases
Genozip version: 13.0.5 github
Date compressed: 2021-12-03 11:25:06 ACDT
Command line: genozip --best --stats --multiseq coronavirus.unwrapped.fasta.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
NONREF                  1.4 MB  92.6%    1.2 GB 100.0%  904.8X
Other                  95.3 KB   6.2%   87.7 KB   0.0%    0.9X
DESC                   18.1 KB   1.2%  526.3 KB   0.0%   29.1X
GENOZIP vs BGZF         1.5 MB 100.0%  254.9 MB 100.0%  170.0X
GENOZIP vs TXT          1.5 MB 100.0%    1.2 GB 100.0%  838.4X

GFF3 - Gene annotation

GFF3 file: chm13.draft_v1.0.gene_annotation.v4.gff3.gz
Sequences: 3,873,663   Dictionaries: 79   Vblocks: 8 x 512 MB  Sections: 562
Genozip version: 13.0.5 conda
Date compressed: 2021-12-08 12:07:18 ACDT
Command line: genozip -ft --best --stats chm13.draft_v1.0.gene_annotation.v4.gff3.gz

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %       TXT      %   RATIO
ID                      4.5 MB  13.9%   78.6 MB   2.1%   17.5X
END                     3.0 MB   9.1%   34.0 MB   0.9%   11.5X
alignment_id            2.0 MB   6.1%   69.1 MB   1.8%   35.0X
source_transcript       1.9 MB   5.9%   60.8 MB   1.6%   31.9X
source_gene_common_n    1.9 MB   5.8%   56.2 MB   1.5%   29.9X
START                   1.7 MB   5.2%   34.0 MB   0.9%   20.3X
transcript_name         1.7 MB   5.1%   35.9 MB   0.9%   21.7X
Parent                  1.6 MB   4.9%   50.9 MB   1.3%   32.1X
havana_transcript       1.5 MB   4.7%   64.2 MB   1.7%   42.5X
transcript_id           1.3 MB   4.1%   50.9 MB   1.3%   38.6X
intron_annotation_su    1.2 MB   3.8%  101.0 MB   2.7%   83.3X
exon_anotation_suppo    1.0 MB   3.2%  108.3 MB   2.8%  104.2X
protein_id            997.4 KB   3.0%   45.0 MB   1.2%   46.2X
adj_stop              825.9 KB   2.5%   22.3 MB   0.6%   27.6X
ATTRS                 818.0 KB   2.5%    2.1 GB  56.8% 2711.0X
adj_start             804.7 KB   2.4%   22.3 MB   0.6%   28.3X
tag                   689.3 KB   2.1%   84.8 MB   2.2%  125.9X
transcript_support_l  569.0 KB   1.7%    3.1 MB   0.1%    5.7X
transcript_biotype    420.6 KB   1.3%   53.9 MB   1.4%  131.2X
Name                  394.6 KB   1.2%   21.8 MB   0.6%   56.6X
TYPE                  386.3 KB   1.2%   22.4 MB   0.6%   59.4X
gene_name             326.5 KB   1.0%   51.3 MB   1.3%  160.9X
PHASE                 321.0 KB   1.0%    7.4 MB   0.2%   23.6X
SCORE                 315.6 KB   1.0%    8.1 MB   0.2%   26.2X
source_gene           293.2 KB   0.9%   65.8 MB   1.7%  229.7X
ccdsid                258.3 KB   0.8%   14.6 MB   0.4%   57.9X
havana_gene           241.3 KB   0.7%   71.0 MB   1.9%  301.3X
proper_orf            205.7 KB   0.6%   14.9 MB   0.4%   74.4X
valid_stop            187.7 KB   0.6%   14.9 MB   0.4%   81.3X
level                 176.8 KB   0.5%    3.5 MB   0.1%   20.4X
valid_start           170.5 KB   0.5%   14.9 MB   0.4%   89.2X
hgnc_id               164.9 KB   0.5%   32.1 MB   0.8%  199.6X
gene_id               129.5 KB   0.4%   51.7 MB   1.4%  408.8X
frameshift            127.2 KB   0.4%   11.1 MB   0.3%   89.4X
unfiltered_paralogy   115.3 KB   0.3%   11.7 MB   0.3%  103.9X
paralogy               76.8 KB   0.2%   11.1 MB   0.3%  147.7X
transcript_class       76.4 KB   0.2%   30.6 MB   0.8%  409.8X
gene_biotype           54.5 KB   0.2%   49.9 MB   1.3%  937.7X
SEQID                  45.4 KB   0.1%   20.2 MB   0.5%  456.6X
STRAND                 33.0 KB   0.1%    7.4 MB   0.2%  229.2X
transcript_modes       32.5 KB   0.1%   29.3 MB   0.8%  921.5X
rna_support            31.0 KB   0.1%   10.3 MB   0.3%  340.7X
collapsed_gene_names   22.2 KB   0.1%   15.1 MB   0.4%  695.0X
collapsed_gene_ids     20.8 KB   0.1%   18.7 MB   0.5%  917.8X
gene_alternate_conti   18.2 KB   0.1%    1.6 MB   0.0%   90.2X
alternative_source_t    5.7 KB   0.0%   11.1 MB   0.3% 1982.3X
ont                     4.6 KB   0.0%  679.7 KB   0.0%  147.0X
Other                   1.7 KB   0.0%         -   0.0%    0.0X
possible_split_gene_    1.3 KB   0.0%   12.5 KB   0.0%    9.5X
novel_5p_cap            1.0 KB   0.0%  394.9 KB   0.0%  383.7X
TXT_HEADER               364 B   0.0%      16 B   0.0%    0.0X
COMMENT                  328 B   0.0%         -   0.0%    0.0X
SOURCE                   160 B   0.0%   14.8 MB   0.4% 97251.2X
extra_paralog            159 B   0.0%   18.5 MB   0.5% 121710.3X
novel_poly_a             130 B   0.0%  390.6 KB   0.0% 3076.8X
reference_support         45 B   0.0%   13.6 MB   0.4% 317191.9X
GENOZIP vs GZ          32.3 MB 100.0%   91.8 MB 100.0%    2.8X
GENOZIP vs TXT         32.3 MB 100.0%    3.7 GB 100.0%  117.9X

23andMe - Consumer DNA test “raw data”

23ANDME file: genome_<redacted>.txt
SNPs: 960,613   Dictionaries: 7   Vblocks: 2 x 16 MB  Sections: 27
Genozip version: 13.0.2 github
Date compressed: 2021-11-09 18:05:24 Cen. Australia Daylight Time

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
ID                      2.3 MB  55.2%    9.3 MB  39.5%    4.1X
POS                     1.5 MB  37.1%    8.4 MB  35.8%    5.5X
GENOTYPE              327.5 KB   7.7%    2.7 MB  11.5%    8.5X
CHROM                   1.9 KB   0.0%    2.2 MB   9.4% 1200.4X
TXT_HEADER               931 B   0.0%     940 B   0.0%    1.0X
Other                    804 B   0.0%  938.1 KB   3.9% 1194.8X
TOTAL                   4.2 MB 100.0%   23.6 MB 100.0%    5.7X

Illumina s.locs file

LOCS file: s.locs
Clusters: 4,091,904   Dictionaries: 3   Vblocks: 1 x 512 MB  Sections: 9
Genozip version: 13.0.5
Date compressed: 2021-11-28 16:51:17 Cen. Australia Daylight Time
Command line: genozip --best --stats s.locs

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
X                       3.0 KB  79.9%   15.6 MB  50.0% 5410.8X
TXT_HEADER               360 B   9.5%      12 B   0.0%    0.0X
Y                        239 B   6.3%   15.6 MB  50.0% 68483.8X
Other                    162 B   4.3%         -   0.0%    0.0X
TOTAL                   3.7 KB 100.0%   31.2 MB 100.0% 8646.4X

Note: ZIP total file size excludes overhead of 2.2 KB

Illumina locs file (for example: s_1_1101.locs)

LOCS file: s_1_1101.locs
Clusters: 812,166   Dictionaries: 3   Vblocks: 1 x 512 MB  Sections: 9
Genozip version: 13.0.5
Date compressed: 2021-11-28 16:57:58 Cen. Australia Daylight Time
Command line: genozip --best --stats s_1_1101.locs

Sections (sorted by % of genozip file):
NAME                   GENOZIP      %      TXT       %   RATIO
X                       2.6 MB  78.5%    3.1 MB  50.0%    1.2X
Y                     720.1 KB  21.5%    3.1 MB  50.0%    4.4X
TXT_HEADER               360 B   0.0%      12 B   0.0%    0.0X
Other                    162 B   0.0%         -   0.0%    0.0X
TOTAL                   3.3 MB 100.0%    6.2 MB 100.0%    1.9X